Daily summaries of preprints from arXiv and bioRxiv. Generated for Decoding Biomolecular Languages.

Decoding Biomolecular Languages
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Daily summaries of preprints from arXiv and bioRxiv. Generated for Decoding Biomolecular Languages.
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Publishing Since
4/6/2026
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Recent Episodes

July 6, 2026
06.07.2026: Fusion of GNNs and LLMs, Safety Evaluation of AI Agents, and Scientific Collaboration at Web Scale
This podcast is brought to you by Scholar FM. ---------------------------------------- Papers included in this episode: 0:09 - Measuring Graph-to-Graph Semantic Similarity in Knowledge Graphs: An Empirical Evaluation of Knowledge Graph Embeddings https://export.arxiv.org/pdf/2606.29180.pdf 1:22 - Clarus: Coordinating Autonomous Research Agents toward Web-Scale Scientific Collaboration https://export.arxiv.org/pdf/2606.30246.pdf 2:18 - Inoculation Adapters: Improved Selective Generalization of Capabilities with Fewer Surprising Backdoors https://export.arxiv.org/pdf/2606.30252.pdf 3:24 - EMPATH: A Multilingual Auditor-Judge Benchmark for Safety Evaluation of Emotional-Support Chatbots https://export.arxiv.org/pdf/2606.30256.pdf 4:21 - PromptGNN-sim: Deep Fusion and Alignment of GNN and LLMs for Text-Attributed Graph Learning https://export.arxiv.org/pdf/2606.30291.pdf ---------------------------------------- scholarfm.com

June 29, 2026
29.06.2026: Unified Multimodal Models, Structure Prediction, and Biomolecular Design
This podcast is brought to you by Scholar FM. ---------------------------------------- Papers included in this episode: 0:09 - Molexar: A Unified Multimodal Molecular Foundation Model for Drug Design https://export.arxiv.org/pdf/2606.25865.pdf ---------------------------------------- scholarfm.com

June 22, 2026
22.06.2026: Integrated Protein Dynamics, Proximity-Inducing Drug Discovery, and Equivariant Deep Learning Models
This podcast is brought to you by Scholar FM. ---------------------------------------- Papers included in this episode: 0:09 - Predicting protein-protein interaction sites based on dynamic perception mechanism within a hierarchical E(n)-equivariant graph. https://doi.org/10.1093/bib/bbag304 1:04 - Proteomics-Driven Strategies for Proximity-Inducing Drug Discovery. https://doi.org/10.1002/anie.3307512 1:55 - DrugDL: Dual-modal deep learning framework for multi-property drug prediction and targeted therapy discovery. https://doi.org/10.1093/bioinformatics/btag392 2:49 - AI-Physics-Experiment Trinity for Integrated Protein Dynamics Modeling. https://doi.org/10.1002/advs.76023 3:37 - AI-Physics-Experiment Trinity for Integrated Protein Dynamics Modeling. https://doi.org/10.1002/advs.76023 ---------------------------------------- scholarfm.com
14 total episodes available
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